AuthorTitleYearJournal/ProceedingsReftypeDOI/URL
Andersson, R.SMAP: A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling 2007 manual 
BibTeX:
@manual{SMAP, 
author = "Robin Andersson", 
title = "SMAP: A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling", 
year = "2007", 
note = "R package version 1.6.0"
}
2012.04.01
Arlot, S. & Celisse, A.Change-Point Detection via Cross-Validation  manualURL 
BibTeX:
@manual{MATLAB:ArlotCelisse, 
author = "Sylvain Arlot and Alain Celisse", 
title = "Change-Point Detection via Cross-Validation", 
url = "http://www.di.ens.fr/~arlot/code/CHPTCV.htm"
}
2012.02.29
Baranowski, R. & Fryzlewicz, P.wbs: Wild Binary Segmentation for multiple change-point detection 2014 manualURL 
BibTeX:
@manual{R:wbs, 
author = "Rafal Baranowski and Piotr Fryzlewicz", 
title = "wbs: Wild Binary Segmentation for multiple change-point detection", 
year = "2014", 
note = "R package version 1.1", 
url = "http://CRAN.R-project.org/package=wbs"
}
2014-02-25
Cleynen, A., Rigaill, G. & Koskas, M.Segmentor3IsBack: A Fast Segmentation Algorithm 2012 manual 
BibTeX:
@manual{R:Segmentor3IsBack, 
author = "Alice Cleynen and Guillem Rigaill and Michel Koskas", 
title = "Segmentor3IsBack: A Fast Segmentation Algorithm", 
year = "2012", 
note = "R package version 1.1"
}
2012.12.03
Erdman, C. & Emerson, J.W.bcp: An R Package for Performing a Bayesian Analysis of Change Point Problems 2007Journal of Statistical Software
Vol. 23(3), pp. 1-13 
articleURL 
BibTeX:
@article{R:bcp, 
author = "Chandra Erdman and John W. Emerson", 
title = "bcp: An R Package for Performing a Bayesian Analysis of Change Point Problems", 
journal = "Journal of Statistical Software", 
year = "2007", 
volume = "23", 
number = "3", 
pages = "1--13", 
url = "http://www.jstatsoft.org/v23/i03/"
}
2012.04.01
Guan, Z.sac: Semiparametric Analysis of Changepoint 2009 manual 
BibTeX:
@manual{R:sac, 
author = "Zhong Guan", 
title = "sac: Semiparametric Analysis of Changepoint", 
year = "2009", 
note = "R package version 1.0.1"
}
2012.12.19
Gurarie, E.bcpa: Behavioral change point analysis of animal movement 2013 manualURL 
BibTeX:
@manual{R:bcpa, 
author = "Eliezer Gurarie", 
title = "bcpa: Behavioral change point analysis of animal movement", 
year = "2013", 
note = "R package version 1.0", 
url = "http://CRAN.R-project.org/package=bcpa"
}
2014.02.28
Hotz, T. & Sieling, H.stepR: Fit Step-Functions 2013 manualURL 
BibTeX:
@manual{R:stepR, 
author = "Thomas Hotz and Hannes Sieling", 
title = "stepR: Fit Step-Functions", 
year = "2013", 
url = "http://www.stochastik.math.uni-goettingen.de/smuce"
}
2013.12.20
Huber, W., Toedling, J. & Steinmetz, L.M.Transcript mapping with high-density oligonucleotide tiling arrays 2006Bioinformatics
Vol. 22, pp. 1963-1970 
article 
BibTeX:
@article{HuberToedlingSteinmetz2006, 
author = "Wolfgang Huber and Joern Toedling and Lars M. Steinmetz", 
title = "Transcript mapping with high-density oligonucleotide tiling arrays", 
journal = "Bioinformatics", 
year = "2006", 
volume = "22", 
pages = "1963--1970"
}
2012.09.16
Iacus, S.M.sde: Simulation and Inference for Stochastic Differential Equations 2009 manualURL 
BibTeX:
@manual{R:sde, 
author = "Stefano Maria Iacus", 
title = "sde: Simulation and Inference for Stochastic Differential Equations", 
year = "2009", 
note = "R package version 2.0.10", 
url = "http://CRAN.R-project.org/package=sde"
}
2012.04.01
Islam, M.S.WaveCD: Wavelet change point detection for array CGH data 2012 manualURL 
BibTeX:
@manual{R:WaveCD, 
author = "M. Shahidul Islam", 
title = "WaveCD: Wavelet change point detection for array CGH data", 
year = "2012", 
note = "R package version 1.0", 
url = "http://CRAN.R-project.org/package=WaveCD"
}
2012.12.03
James, N.A. & Matteson, D.S.ecp: An R Package for Nonparametric Multiple Change Point Analysis of Multivariate Data 2013ArXiv e-prints articleURL 
BibTeX:
@article{2013arXiv1309.3295J, 
author = "James, N.~A. and Matteson, D.~S.", 
title = "ecp: An R Package for Nonparametric Multiple Change Point Analysis of Multivariate Data", 
journal = "ArXiv e-prints", 
year = "2013", 
url = "http://adsabs.harvard.edu/abs/2013arXiv1309.3295J"
}
2013.12.20
Killick, R. & Eckley, I.A.changepoint: An R package for changepoint analysis 2011 manualURL 
BibTeX:
@manual{R:changepoint, 
author = "Rebecca Killick and Idris A. Eckley", 
title = "changepoint: An R package for changepoint analysis", 
year = "2011", 
note = "R package version 0.5", 
url = "http://CRAN.R-project.org/package=changepoint"
}
2012.04.01
Lamy, P., Wiuf, C., Ørntoft, T.F. & Andersen, C.L.Rseg: an R package to optimize segmentation of SNP array data 2011Bioinformatics
Vol. 27(3), pp. 419-420 
articleDOI URL 
BibTeX:
@article{R:Rseg, 
author = "Lamy, Philippe and Wiuf, Carsten and Ørntoft, Torben F. and Andersen, Claus L.", 
title = "Rseg: an R package to optimize segmentation of SNP array data", 
journal = "Bioinformatics", 
year = "2011", 
volume = "27", 
number = "3", 
pages = "419-420", 
url = "http://bioinformatics.oxfordjournals.org/content/27/3/419.abstract", 
doi = "http://dx.doi.org/10.1093/bioinformatics/btq668"
}
2012.04.01
Muggeo, V.M.cumSeg: Change point detection in genomic sequences 2011 manualURL 
BibTeX:
@manual{R:cumSeg, 
author = "Vito M.R. Muggeo", 
title = "cumSeg: Change point detection in genomic sequences", 
year = "2011", 
note = "R package version 1.1", 
url = "http://CRAN.R-project.org/package=cumSeg"
}
2012.04.01
Nuel, G. & Luong, T.M.postCP: A package to estimate posterior probabilities in change-point models using constrained HMM 2012 manualURL 
BibTeX:
@manual{R:postCP, 
author = "Gregory Nuel and The Minh Luong", 
title = "postCP: A package to estimate posterior probabilities in change-point models using constrained HMM", 
year = "2012", 
note = "R package version 1.05", 
url = "http://CRAN.R-project.org/package=postCP"
}
2012.04.01
Picard, F., Hoebeke, M., Lebarbier, E., Rigaill, G. & Robin, S.cghseg: Segmentation methods for array CGH analysis 2011 manualURL 
BibTeX:
@manual{R:cghseg, 
author = "Franck Picard and Mark Hoebeke and Emilie Lebarbier and Guillem Rigaill and Stephane Robin", 
title = "cghseg: Segmentation methods for array CGH analysis", 
year = "2011", 
note = "R package version 0.0.1", 
url = "http://CRAN.R-project.org/package=cghseg"
}
2012.12.03
Ross, G.J.Nonparametric Sequential Change Detection in R: The cpm package 2012 manualURL 
BibTeX:
@manual{R:cpm, 
author = "Gordon J. Ross", 
title = "Nonparametric Sequential Change Detection in R: The cpm package", 
year = "2012", 
url = "http://www2.imperial.ac.uk/~gr203/software.html"
}
2012.02.29
Seshan, V.E. & Olshen, A.DNAcopy: DNA copy number data analysis  manual 
BibTeX:
@manual{R:DNAcopy, 
author = "Venkatraman E. Seshan and Adam Olshen", 
title = "DNAcopy: DNA copy number data analysis", 
note = "R package version 1.24.0"
}
2012.04.01
Shen, J.J. & Zhang, N.R.seqCBS: CN Profiling using Sequencing and CBS 2011 manualURL 
BibTeX:
@manual{R:seqCBS, 
author = "Jeremy J. Shen and Nancy R. Zhang", 
title = "seqCBS: CN Profiling using Sequencing and CBS", 
year = "2011", 
note = "R package version 1.2", 
url = "http://CRAN.R-project.org/package=seqCBS"
}
2012.04.01
Smith, M.L., Marioni, J.C., McKinney, S., Hardcastle, T. & Thorne, N.P.snapCGH: Segmentation, normalisation and processing of aCGH data. 2009 manual 
BibTeX:
@manual{SmithMarioniMcKinneyHardcastleThorne2009, 
author = "Mike L. Smith and John C. Marioni and Steven McKinney and Thomas Hardcastle and Natalie P. Thorne", 
title = "snapCGH: Segmentation, normalisation and processing of aCGH data.", 
year = "2009", 
note = "R package version 1.26.0"
}
2012.09.16
Solanas, A., Manolov, R. & Onghena, P.SLC: Slope and level change 2010 manualURL 
BibTeX:
@manual{SLC, 
author = "Antonio Solanas and Rumen Manolov and Patrick Onghena", 
title = "SLC: Slope and level change", 
year = "2010", 
note = "R package version 0.2", 
url = "http://CRAN.R-project.org/package=SLC"
}
2012.04.01
Verbesselt, J., Zeileis, A., Hyndman, R. & Jong, R.D.Breaks For Additive Season and Trend (BFAST) 2014 manualURL 
BibTeX:
@manual{R:bfast, 
author = "Jan Verbesselt and Achim Zeileis and Rob Hyndman and Rogier De Jong", 
title = "Breaks For Additive Season and Trend (BFAST)", 
year = "2014", 
note = "R package version 1.4.4", 
url = "http://CRAN.R-project.org/package=bfast"
}
2014.03.24
Villanueva, N.M., Sestelo, M. & nas, J.R.P.seq2R: An R package to detect DNA compositional change points with statistical support 2012Computational Statistics and Data Analysis
Vol. submitted 
article 
BibTeX:
@article{R:seq2R, 
author = "Nora M. Villanueva and Marta Sestelo and Javier Roca Pardiñas", 
title = "seq2R: An R package to detect DNA compositional change points with statistical support", 
journal = "Computational Statistics and Data Analysis", 
year = "2012", 
volume = "submitted"
}
2012.12.03
Vito, M. & Muggeo, R.segmented: an R Package to Fit Regression Models with Broken-Line Relationships. 2008R News
Vol. 8(1), pp. 20-25 
articleURL 
BibTeX:
@article{VitoMuggeo2008, 
author = "Vito, M. and Muggeo, R.", 
title = "segmented: an R Package to Fit Regression Models with Broken-Line Relationships.", 
journal = "R News", 
year = "2008", 
volume = "8", 
number = "1", 
pages = "20--25", 
url = "http://cran.r-project.org/doc/Rnews/"
}
2012.09.16
Wangler, M. & Beyersmann, J.changeLOS: Change in LOS 2009 manualURL 
BibTeX:
@manual{changeLOS, 
author = "Matthias Wangler and Jan Beyersmann", 
title = "changeLOS: Change in LOS", 
year = "2009", 
note = "R package version 2.0.9-2", 
url = "http://CRAN.R-project.org/package=changeLOS"
}
2012.04.01
Zeileis, A., Leisch, F., Hornik, K. & Kleiber, C.strucchange: An R Package for Testing for Structural Change in Linear Regression Models 2002Journal of Statistical Software
Vol. 7(2), pp. 1-38 
articleURL 
BibTeX:
@article{R:strucchange, 
author = "Achim Zeileis and Friedrich Leisch and Kurt Hornik and Christian Kleiber", 
title = "strucchange: An R Package for Testing for Structural Change in Linear Regression Models", 
journal = "Journal of Statistical Software", 
year = "2002", 
volume = "7", 
number = "2", 
pages = "1--38", 
url = "http://www.jstatsoft.org/v07/i02/"
}
2012.04.01

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