@manual{SMAP, 
author = "Robin Andersson", 
title = "SMAP: A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling", 
year = "2007", 
note = "R package version 1.6.0"
}

@manual{MATLAB:ArlotCelisse, 
author = "Sylvain Arlot and Alain Celisse", 
title = "Change-Point Detection via Cross-Validation", 
url = "http://www.di.ens.fr/ arlot/code/CHPTCV.htm"
}

@manual{R:wbs, 
author = "Rafal Baranowski and Piotr Fryzlewicz", 
title = "wbs: Wild Binary Segmentation for multiple change-point detection", 
year = "2014", 
note = "R package version 1.1", 
url = "http://CRAN.R-project.org/package=wbs"
}

@manual{R:Segmentor3IsBack, 
author = "Alice Cleynen and Guillem Rigaill and Michel Koskas", 
title = "Segmentor3IsBack: A Fast Segmentation Algorithm", 
year = "2012", 
note = "R package version 1.1"
}

@article{R:bcp, 
author = "Chandra Erdman and John W. Emerson", 
title = "bcp: An R Package for Performing a Bayesian Analysis of Change Point Problems", 
journal = "Journal of Statistical Software", 
year = "2007", 
volume = "23", 
number = "3", 
pages = "1--13", 
url = "http://www.jstatsoft.org/v23/i03/"
}

@manual{R:sac, 
author = "Zhong Guan", 
title = "sac: Semiparametric Analysis of Changepoint", 
year = "2009", 
note = "R package version 1.0.1"
}

@manual{R:bcpa, 
author = "Eliezer Gurarie", 
title = "bcpa: Behavioral change point analysis of animal movement", 
year = "2013", 
note = "R package version 1.0", 
url = "http://CRAN.R-project.org/package=bcpa"
}

@manual{changepoint.np, 
author = "Kaylea Haynes and Rebecca Killick and Paul Fearnhead and Idris Eckley", 
title = "changepoint.np: Methods for Nonparametric Changepoint Detection", 
note = "R package version 0.0.2", 
url = "https://cran.r-project.org/web/packages/changepoint.np/changepoint.np.pdf"
}

@manual{surveillance, 
author = "Michael Höhle and Sebastian Meyer et al.", 
title = "surveillance: Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena", 
note = "R package version 1.13.1", 
url = "https://cran.r-project.org/web/packages/surveillance/surveillance.pdf"
}

@manual{R:stepR, 
author = "Thomas Hotz and Hannes Sieling", 
title = "stepR: Fit Step-Functions", 
year = "2013", 
url = "http://www.stochastik.math.uni-goettingen.de/smuce"
}

@article{HuberToedlingSteinmetz2006, 
author = "Wolfgang Huber and Joern Toedling and Lars M. Steinmetz", 
title = "Transcript mapping with high-density oligonucleotide tiling arrays", 
journal = "Bioinformatics", 
year = "2006", 
volume = "22", 
pages = "1963--1970"
}

@manual{R:sde, 
author = "Stefano Maria Iacus", 
title = "sde: Simulation and Inference for Stochastic Differential Equations", 
year = "2009", 
note = "R package version 2.0.10", 
url = "http://CRAN.R-project.org/package=sde"
}

@manual{R:WaveCD, 
author = "M. Shahidul Islam", 
title = "WaveCD: Wavelet change point detection for array CGH data", 
year = "2012", 
note = "R package version 1.0", 
url = "http://CRAN.R-project.org/package=WaveCD"
}

@article{2013arXiv1309.3295J, 
author = "James, N. A. and Matteson, D. S.", 
title = "ecp: An R Package for Nonparametric Multiple Change Point Analysis of Multivariate Data", 
journal = "ArXiv e-prints", 
year = "2013", 
url = "http://adsabs.harvard.edu/abs/2013arXiv1309.3295J"
}

@manual{EnvCpt, 
author = "Rebecca Killick and Claudie Beaulieu and Simon Taylor", 
title = "EnvCpt: Detection of Structural Changes in Climate and Environment Time Series", 
note = "R version 0.1.1", 
url = "https://cran.r-project.org/web/packages/EnvCpt/EnvCpt.pdf"
}

@manual{R:changepoint, 
author = "Rebecca Killick and Idris A. Eckley", 
title = "changepoint: An R package for changepoint analysis", 
year = "2011", 
note = "R package version 0.5", 
url = "http://CRAN.R-project.org/package=changepoint"
}

@article{R:Rseg, 
author = "Lamy, Philippe and Wiuf, Carsten and Ørntoft, Torben F. and Andersen, Claus L.", 
title = "Rseg: an R package to optimize segmentation of SNP array data", 
journal = "Bioinformatics", 
year = "2011", 
volume = "27", 
number = "3", 
pages = "419-420", 
url = "http://bioinformatics.oxfordjournals.org/content/27/3/419.abstract", 
doi = "http://doi.org/10.1093/bioinformatics/btq668"
}

@manual{R:cumSeg, 
author = "Vito M.R. Muggeo", 
title = "cumSeg: Change point detection in genomic sequences", 
year = "2011", 
note = "R package version 1.1", 
url = "http://CRAN.R-project.org/package=cumSeg"
}

@manual{R:postCP, 
author = "Gregory Nuel and The Minh Luong", 
title = "postCP: A package to estimate posterior probabilities in change-point models using constrained HMM", 
year = "2012", 
note = "R package version 1.05", 
url = "http://CRAN.R-project.org/package=postCP"
}

@manual{R:cghseg, 
author = "Franck Picard and Mark Hoebeke and Emilie Lebarbier and Guillem Rigaill and Stephane Robin", 
title = "cghseg: Segmentation methods for array CGH analysis", 
year = "2011", 
note = "R package version 0.0.1", 
url = "http://CRAN.R-project.org/package=cghseg"
}

@manual{R:cpm, 
author = "Gordon J. Ross", 
title = "Nonparametric Sequential Change Detection in R: The cpm package", 
year = "2012", 
url = "http://www2.imperial.ac.uk/ gr203/software.html"
}

@manual{R:DNAcopy, 
author = "Venkatraman E. Seshan and Adam Olshen", 
title = "DNAcopy: DNA copy number data analysis", 
note = "R package version 1.24.0"
}

@manual{R:seqCBS, 
author = "Jeremy J. Shen and Nancy R. Zhang", 
title = "seqCBS: CN Profiling using Sequencing and CBS", 
year = "2011", 
note = "R package version 1.2", 
url = "http://CRAN.R-project.org/package=seqCBS"
}

@manual{SmithMarioniMcKinneyHardcastleThorne2009, 
author = "Mike L. Smith and John C. Marioni and Steven McKinney and Thomas Hardcastle and Natalie P. Thorne", 
title = "snapCGH: Segmentation, normalisation and processing of aCGH data.", 
year = "2009", 
note = "R package version 1.26.0"
}

@manual{SLC, 
author = "Antonio Solanas and Rumen Manolov and Patrick Onghena", 
title = "SLC: Slope and level change", 
year = "2010", 
note = "R package version 0.2", 
url = "http://CRAN.R-project.org/package=SLC"
}

@manual{R:bfast, 
author = "Jan Verbesselt and Achim Zeileis and Rob Hyndman and Rogier De Jong", 
title = "Breaks For Additive Season and Trend (BFAST)", 
year = "2014", 
note = "R package version 1.4.4", 
url = "http://CRAN.R-project.org/package=bfast"
}

@article{R:seq2R, 
author = "Nora M. Villanueva and Marta Sestelo and Javier Roca Pardiñas", 
title = "seq2R: An R package to detect DNA compositional change points with statistical support", 
journal = "Computational Statistics and Data Analysis", 
year = "2012", 
volume = "submitted"
}

@article{VitoMuggeo2008, 
author = "Vito, M. and Muggeo, R.", 
title = "segmented: an R Package to Fit Regression Models with Broken-Line Relationships.", 
journal = "R News", 
year = "2008", 
volume = "8", 
number = "1", 
pages = "20--25", 
url = "http://cran.r-project.org/doc/Rnews/"
}

@manual{changeLOS, 
author = "Matthias Wangler and Jan Beyersmann", 
title = "changeLOS: Change in LOS", 
year = "2009", 
note = "R package version 2.0.9-2", 
url = "http://CRAN.R-project.org/package=changeLOS"
}

@article{R:strucchange, 
author = "Achim Zeileis and Friedrich Leisch and Kurt Hornik and Christian Kleiber", 
title = "strucchange: An R Package for Testing for Structural Change in Linear Regression Models", 
journal = "Journal of Statistical Software", 
year = "2002", 
volume = "7", 
number = "2", 
pages = "1--38", 
url = "http://www.jstatsoft.org/v07/i02/"
}